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STRINGSTRING
pglA1 protein (Xanthomonas campestris campestris) - STRING interaction network
"pglA1" - Endopolygalacturonase in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pglA1Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family (466 aa)    
Predicted Functional Partners:
pme1
Pectinesterase; Pectin methylesterase (325 aa)
 
  0.993
pme2
Pectinesterase; Pectin methylesterase (401 aa)
 
  0.979
pel1
Pectate lyase (353 aa)
 
   
  0.977
pel3
Pectate lyase (377 aa)
 
   
  0.973
pel2
annotation not available (380 aa)
 
   
  0.973
uxaC
Glucuronate isomerase (471 aa)
       
  0.909
pglA2
Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family (556 aa)
   
   
0.866
xylB5
Xylosidase; Hydrolyzes 1,4-beta-D-xylans to remove successive D-xylose residues from the non-reducing termini; Belongs to the glycosyl hydrolase 43 family (544 aa)
 
   
  0.862
xynB
annotation not available (521 aa)
   
   
    0.859
xylB4
Xylosidase/arabinosidase; Beta-xylosidase; Belongs to the glycosyl hydrolase 43 family (555 aa)
 
   
  0.857
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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