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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3441Predicted outer membrane lipoprotein (125 aa)    
Predicted Functional Partners:
XCC2744
Predicted outer membrane lipoprotein
  
     0.602
XCC3440
Uncharacterized protein
       0.600
gnd
6-phosphogluconate dehydrogenase
       0.554
XCC3442
Outer membrane protein/protective antigen OMA87
       0.546
nadM
Bifunctional NMN adenylyltransferase/nudix hydrolase; Nicotinamide mononucleotide adenylyltransferase; ADP-ribose pyrophosphatase
       0.536
pbeF
Pre-B cell enhancing factor related protein; Nicotinic acid phosphoribosyltransferase
       0.536
XCC3444
annotation not available
       0.536
XCC3443
Methyltransferase; DNA modification methylase; Belongs to the N(4)/N(6)-methyltransferase family
       0.536
XCC0496
Predicted membrane protein
  
     0.480
XCC0458
Probable lipid kinase YegS-like; Probably phosphorylates lipids; the in vivo substrate is unknown
  
   
 0.465
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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