STRINGSTRING
ydgJ protein (Xanthomonas campestris campestris) - STRING interaction network
"ydgJ" - Oxidoreductase in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydgJOxidoreductase; Predicted dehydrogenases (352 aa)    
Predicted Functional Partners:
XCC3437
Predicted periplasmic or secreted lipoprotein (120 aa)
              0.713
pgk
3-phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family (391 aa)
   
   
  0.609
gltB
Glutamate synthase, alpha subunit; Glutamate synthase domain 2 (1490 aa)
     
   
  0.574
metN
Methionine import ATP-binding protein MetN; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system (335 aa)
     
      0.461
XCC2170
Iron dependent repressor; Mn-dependent transcriptional regulator (155 aa)
       
 
  0.457
wxcM
Bifunctional acetyl transferase/isomerase; Tetrahydrodipicolinate N-succinyltransferase (309 aa)
       
  0.423
npdA
NAD-dependent protein deacetylase; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily (293 aa)
       
      0.410
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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