close STRING Data Update
The upcoming version of STRING is available for preview: it includes new data, new enrichment categories (e.g. diseases and tissues) and covers 14000 fully sequenced genomes.
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xcsEType II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB (499 aa)    
Predicted Functional Partners:
xcsF
Type II secretory pathway component PulF
 
 
 0.993
xcsD
Type II secretory pathway, component PulD
 
  
 0.981
xcsG
Type II secretory pathway pseudopilin PulG
 
 
 0.967
xcsJ
Type II secretory pathway component PulJ
 
   
 0.938
xpsF
Type II secretion system protein F; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
 
 
 0.920
xcsL
Type II secretory pathway component PulL
 
 
 0.916
CAP50436.1
Type II secretory pathway, component PulF
 
 
 0.912
xcsC
Type II secretory pathway component PulC
 
  
 0.910
XCC3427
Outer membrane receptor proteins mostly Fe transport
 
    0.884
xcsK
Type II secretory pathway, component PulK
 
  
 0.879
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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