STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
betTCholine-glycine betaine transporter; Belongs to the BCCT transporter (TC 2.A.15) family (659 aa)    
Predicted Functional Partners:
betA
Oxygen-dependent choline dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
 
  
 0.835
XCC3403
NAD/NADP-dependent betaine aldehyde dehydrogenase; Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the reversible oxidation of betaine aldehyde to the corresponding acid
 
  
 0.786
proP1
Proline/betaine transporter; Permeases of the major facilitator superfamily
      
 0.744
proP2
Prop transport protein; Permeases of the major facilitator superfamily
      
 0.724
dpp
Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
      
 0.603
treA
Periplasmic trehalase; Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
      
 0.603
XCC3401
Uncharacterized protein; Metal-dependent hydrolase
 
     0.600
otsB
Trehalose 6-phosphate phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose
      
 0.597
yehZ
ABC transporter amino acid permease; Glycine betaine/choline-binding ABC transporter components
     
 0.538
cfa1
Cyclopropane fatty acid synthase and related methyltransferases
     
 0.505
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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