STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3398Cytochrome c553 (265 aa)    
Predicted Functional Partners:
petC
Cytochrome c1
  
   
 0.859
XCC0254
Cytochrome c5
 
  
 0.848
petA
Ubiquinol-cytochrome c reductase iron-sulfur subunit; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
 
   
 0.771
petB
Cytochrome b; Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
 
  
 0.759
engB
Probable GTP-binding protein EngB; Necessary for normal cell division and for the maintenance of normal septation
       0.735
dsbA2
Thiol:disulfide interchange protein; Thiol-disulfide isomerase and thioredoxins
 
   
 0.681
dsbA1
Thiol:disulfide interchange protein; Thiol-disulfide isomerase and thioredoxins
 
   
 0.668
XCC3827
SURF1-like protein
  
     0.596
fadH
NADH:flavin oxidoreductases Old Yellow Enzyme family
   
 
 0.555
XCC2412
Oxidoreductase; Uncharacterized NAD(FAD)-dependent dehydrogenases
   
 
 0.539
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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