STRINGSTRING
ybhD protein (Xanthomonas campestris campestris) - STRING interaction network
"ybhD" - Transcriptional regulator in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybhDTranscriptional regulator (304 aa)    
Predicted Functional Partners:
XCC3390
Uncharacterized protein conserved in bacteria (91 aa)
              0.845
CAP50149.1
annotation not available (80 aa)
              0.845
XCC3389
Zn-dependent alcohol dehydrogenases class III; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily (369 aa)
              0.643
XCC3392
Putative malic acid transport protein; Tellurite resistance protein and related permeases (393 aa)
              0.637
gfa
Glutathione-dependent formaldehyde-activating enzyme; Catalyzes the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione; Belongs to the Gfa family (191 aa)
              0.493
rng
Ribonucleases G and E (499 aa)
     
      0.402
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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