• Version:
  • 11.0 (preview - - version 10.5 still available here)
STRINGSTRING
gfa protein (Xanthomonas campestris campestris) - STRING interaction network
"gfa" - Glutathione-dependent formaldehyde-activating enzyme in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gfaGlutathione-dependent formaldehyde-activating enzyme; Catalyzes the condensation of formaldehyde and glutathione to S-hydroxymethylglutathione; Belongs to the Gfa family (191 aa)    
Predicted Functional Partners:
XCC3389
Zn-dependent alcohol dehydrogenases class III; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily (369 aa)
     
  0.972
adh
Zn-dependent alcohol dehydrogenases class III (368 aa)
     
  0.970
fghA
S-formylglutathione hydrolase; Serine hydrolase involved in the detoxification of formaldehyde (276 aa)
 
   
  0.965
msrB
Conserved domain frequently associated with peptide methionine sulfoxide reductase; Belongs to the MsrB Met sulfoxide reductase family (154 aa)
   
   
  0.711
flhA
Flagellar biosynthesis protein FlhA; Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin (697 aa)
           
  0.641
clpP
ATP-dependent Clp protease proteolytic subunit; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins; Belongs to the peptidase S14 family (208 aa)
           
  0.612
folD
Bifunctional protein FolD; Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate (294 aa)
           
  0.595
XCC3390
Uncharacterized protein conserved in bacteria (91 aa)
              0.523
CAP50149.1
annotation not available (80 aa)
              0.493
ybhD
Transcriptional regulator (304 aa)
              0.493
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
Server load: low (18%) [HD]