close STRING Data Update
The upcoming version of STRING is available for preview: it includes new data, new enrichment categories (e.g. diseases and tissues) and covers 14000 fully sequenced genomes.
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tctETwo-component system sensor protein; Signal transduction histidine kinase (461 aa)    
Predicted Functional Partners:
tctD
Two-component system regulatory protein; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
 
 0.996
afuA
Spermidine/putrescine-binding periplasmic protein
     0.991
oprP1
Phosphate-selective porin
 
     0.816
ygiX
Two-component system regulatory protein; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
 
 
 0.717
XCC3349
Transcriptional regulator luxR/uhpA family; Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain
   
   0.620
XCC1973
annotation not available
  
     0.570
XCC2649
annotation not available
  
 
   0.534
regS
Two-component system sensor protein; Signal transduction histidine kinase
  
     0.531
XCC2621
annotation not available
  
     0.529
regR
Two-component system regulatory protein; Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
  
   
 0.528
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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