STRINGSTRING
pcm protein (Xanthomonas campestris campestris) - STRING interaction network
"pcm" - Protein-L-isoaspartate carboxylmethyltransferase in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pcmProtein-L-isoaspartate carboxylmethyltransferase (218 aa)    
Predicted Functional Partners:
raxC
Outer membrane protein (457 aa)
 
     
  0.904
XCC0242
Uncharacterized protein; Nitroreductase (398 aa)
         
  0.716
XCC3334
Transcriptional regulator (217 aa)
              0.681
thrC
Threonine synthase; Unnamed protein product (435 aa)
         
  0.613
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (927 aa)
   
   
  0.548
tatC
Sec-independent protein translocase protein TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides (245 aa)
     
      0.512
surE
5’-nucleotidase SurE; Nucleotidase that shows phosphatase activity on nucleoside 5’-monophosphates; Belongs to the SurE nucleotidase family (259 aa)
 
   
  0.495
nlpD
Lipoprotein; Membrane proteins related to metalloendopeptidases (255 aa)
       
  0.494
XCC2748
UPF0301 protein XCC2748; Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family (188 aa)
   
 
  0.401
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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