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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3333Uncharacterized protein; Predicted periplasmic ligand-binding sensor domain (870 aa)    
Predicted Functional Partners:
CAP50207.1
FOG: GGDEF domain
      0.878
XCC2360
Signal transduction histidine kinase
 
 
 0.711
XCC3334
Transcriptional regulator
   
   0.627
XCC1958
C-di-GMP phosphodiesterase A; FOG: EAL domain
  
 
 0.575
XCC0114
Transcriptional regulator; FOG: WD40 repeat
 
 
 
 0.573
XCC1430
annotation not available
 
     0.556
XCC2153
Two-component system sensor protein; FOG: PAS/PAC domain
   
 
 0.546
XCC0240
annotation not available
 
 
 0.541
XCC0047
annotation not available
  
     0.534
torS
Two-component system sensor protein; Signal transduction histidine kinase
 
 
 0.533
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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