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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP50207.1FOG: GGDEF domain (169 aa)    
Predicted Functional Partners:
vieA
Response regulator; FOG: EAL domain
 
 
 0.887
XCC3333
Uncharacterized protein; Predicted periplasmic ligand-binding sensor domain
      0.878
XCC2361
Two-component system regulatory protein; Response regulator containing a CheY-like receiver domain and an HD-GYP domain
 
 
 0.853
XCC2023
Predicted signal transduction protein containing sensor and EAL domains
 
 
   0.842
XCC1086
Uncharacterized protein; FOG: EAL domain
 
 
 0.841
XCC1049
Regulatory protein-PilH family; FOG: CheY-like receiver
 
  
   0.815
XCC1777
Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain
 
 0.811
XCC3877
Predicted signal transduction protein containing sensor and EAL domains
 
     0.808
rpfG
Response regulator containing a CheY-like receiver domain and an HD-GYP domain
 
 
 0.794
XCC2291
Predicted signal transduction protein containing a membrane domain an EAL and a GGDEF domain
 
 0.738
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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