STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fepATonB-dependent receptor; Predicted hydrolase (HAD superfamily) (763 aa)    
Predicted Functional Partners:
lao
Flavin monoamine oxidase-related protein; Monoamine oxidase
 
     0.773
CAP50252.1
Monoamine oxidase
 
     0.748
tdcF
TdcF protein; Putative translation initiation inhibitor yjgF family
 
     0.710
XCC2572
Outer membrane receptor proteins mostly Fe transport
  
    0.709
XCC3277
Cytochrome c mono- and diheme variants
 
     0.644
tonB
Periplasmic protein TonB, links inner and outer membranes
 
 
 
 0.619
fecR
Fe2+-dicitrate sensor, membrane component
 
 
 0.612
CAP51862.1
Signal transduction kinase
  
     0.577
XCC3075
annotation not available
  
     0.572
XCC1496
annotation not available
  
     0.548
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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