STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
laoFlavin monoamine oxidase-related protein; Monoamine oxidase (402 aa)    
Predicted Functional Partners:
CAP50252.1
Monoamine oxidase
     0.996
XCC3277
Cytochrome c mono- and diheme variants
 
   
 0.959
tdcF
TdcF protein; Putative translation initiation inhibitor yjgF family
 
   
 0.949
XCC1791
NAD-dependent aldehyde dehydrogenases; Belongs to the aldehyde dehydrogenase family
     
 0.903
adh
Zn-dependent alcohol dehydrogenases class III
     
 0.900
XCC3389
Zn-dependent alcohol dehydrogenases class III; Belongs to the zinc-containing alcohol dehydrogenase family. Class-III subfamily
     
 0.900
XCC2550
Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
   
 
  0.807
XCC0575
Lactoylglutathione lyase; Catalyzes the conversion of hemimercaptal, formed from methylglyoxal and glutathione, to S-lactoylglutathione
     
  0.800
hisC2
Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase
 
    0.776
fepA
TonB-dependent receptor; Predicted hydrolase (HAD superfamily)
 
     0.773
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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