STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tdcFTdcF protein; Putative translation initiation inhibitor yjgF family (167 aa)    
Predicted Functional Partners:
XCC3277
Cytochrome c mono- and diheme variants
   
 0.985
CAP50252.1
Monoamine oxidase
 
   
 0.949
lao
Flavin monoamine oxidase-related protein; Monoamine oxidase
 
   
 0.949
hisC2
Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase
 
     0.878
XCC2288
UPF0178 protein XCC2288; Uncharacterized protein conserved in bacteria; Belongs to the UPF0178 family
 
      0.744
pyrC
Dihydroorotase and related cyclic amidohydrolases
  
  
 0.728
fepA
TonB-dependent receptor; Predicted hydrolase (HAD superfamily)
 
     0.710
murE
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase; Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan; Belongs to the MurCDEF family. MurE subfamily
     
 0.709
murD
UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA); Belongs to the MurCDEF family
      
 0.704
XCC3678
annotation not available
 
     0.661
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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