STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3246Transcriptional regulator (289 aa)    
Predicted Functional Partners:
kdgD
Probable 5-dehydro-4-deoxyglucarate dehydratase; Dihydrodipicolinate synthase/N-acetylneuraminate lyase; Belongs to the DapA family
 
     0.758
gudD
Glucarate hydratase; L-alanine-DL-glutamate epimerase and related enzymes of enolase superfamily; Belongs to the mandelate racemase/muconate lactonizing enzyme family
 
     0.638
garP
Glucarate transporter; Permeases of the major facilitator superfamily
 
 
   0.627
CAP50287.1
annotation not available
       0.619
XCC3244
Ketoglutarate semialdehyde dehydrogenase; NAD-dependent aldehyde dehydrogenases
 
     0.562
garD
Altronate dehydratase
 
     0.477
XCC3781
B-lactamase regulatory protein; Transcriptional regulator
  
  
 0.463
XCC2955
Transcriptional regulator
      
 0.438
XCC1190
Transcriptional regulator
  
     0.411
ynfM
MFS transporter; Permeases of the major facilitator superfamily
  
   0.405
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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