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rpmE protein (Xanthomonas campestris campestris) - STRING interaction network
"rpmE" - Ribosomal protein L31 in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rpmERibosomal protein L31 (92 aa)    
Predicted Functional Partners:
rpmB
Ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family (78 aa)
 
 
  0.995
rpmI
Ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family (65 aa)
 
 
  0.976
rpmG
Ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family (55 aa)
   
 
  0.975
rpmJ
Ribosomal protein L36; Belongs to the bacterial ribosomal protein bL36 family (41 aa)
   
 
  0.975
rpsR
30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit (76 aa)
   
 
  0.973
rpsN
30S ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site (101 aa)
 
 
  0.973
rpsT
30S ribosomal protein S20; Binds directly to 16S ribosomal RNA (89 aa)
   
 
  0.969
rpsP
Ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family (86 aa)
   
 
  0.965
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20 (106 aa)
   
 
  0.947
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (135 aa)
   
 
  0.942
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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