STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mrcAMembrane carboxypeptidase/penicillin-binding protein (811 aa)    
Predicted Functional Partners:
ponB
Penicillin-binding protein 1B; Cell wall formation. Synthesis of cross-linked peptidoglycan from the lipid intermediates. The enzyme has a penicillin-insensitive transglycosylase N-terminal domain (formation of linear glycan strands) and a penicillin-sensitive transpeptidase C-terminal domain (cross-linking of the peptide subunits)
 
 
0.919
dacC
Penicillin-binding protein 6; D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family
     
 0.900
pbpC
Membrane carboxypeptidase/penicillin-binding protein PbpC
  
  
0.830
XCC1132
Uncharacterized protein; D-alanyl-D-alanine carboxypeptidase
     
  0.800
XCC0711
Unnamed protein product
    
 
 0.771
mrdA
Peptidoglycan D,D-transpeptidase MrdA; Catalyzes cross-linking of the peptidoglycan cell wall; Belongs to the transpeptidase family. MrdA subfamily
  
 
 0.767
pilM
Tfp pilus assembly protein ATPase PilM
     
 0.736
pilP
Tfp pilus assembly protein PilP
     
 0.701
CAP50306.1
Type II secretory pathway, component HofQ
     
 0.695
pilN
Tfp pilus assembly protein PilN
       0.693
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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