STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lytMMembrane proteins related to metalloendopeptidases (243 aa)    
Predicted Functional Partners:
XCC3210
Uncharacterized protein conserved in bacteria
 
 
 
 0.943
nlpD
Lipoprotein; Membrane proteins related to metalloendopeptidases
 
  
 0.861
XCC2299
N-acetylmuramoyl-L-alanine amidase
     
 0.729
amiC2
N-acetylmuramoyl-L-alanine amidase
     
 0.729
XCC2710
Metallopeptidase; Predicted metalloendopeptidase
      
 0.706
XCC2576
Metallopeptidase; Predicted metalloendopeptidase
      
 0.706
XCC2575
Metallopeptidase; Predicted metalloendopeptidase
      
 0.706
XCC2574
Metallopeptidase; Predicted metalloendopeptidase
      
 0.706
XCC2035
Metallopeptidase; Predicted metalloendopeptidase
      
 0.706
XCC3671
Metallopeptidase; Predicted metalloendopeptidase
      
 0.706
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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