STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ompW2Outer membrane protein W (204 aa)    
Predicted Functional Partners:
ompW1
Outer membrane protein W
 
    
0.578
sdhB
Succinate dehydrogenase/fumarate reductase Fe-S protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family
   
 
 0.565
sdhA
Succinate dehydrogenase/fumarate reductase flavoprotein subunits; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily
   
   0.507
nucS
Endonuclease; Hydrolyzes single stranded DNA and RNA
       0.483
mucD
Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain; Belongs to the peptidase S1C family
    
 
 0.479
htrA
Trypsin-like serine proteases typically periplasmic contain C-terminal PDZ domain; Belongs to the peptidase S1C family
    
 
 0.479
XCC3197
Beta-lactamase; Zn-dependent hydrolases including glyoxylases
       0.442
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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