STRINGSTRING
idgB protein (Xanthomonas campestris campestris) - STRING interaction network
"idgB" - Indigoidine synthesis like protein in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
idgBIndigoidine synthesis like protein; Predicted phosphatases (215 aa)    
Predicted Functional Partners:
pgk
3-phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family (391 aa)
   
   
  0.910
XCC2550
Lactate dehydrogenase and related dehydrogenases; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family (352 aa)
   
 
    0.900
XCC0584
Predicted phosphatases (216 aa)
   
   
 
0.850
gph1
VirP protein; Predicted phosphatases (239 aa)
   
   
    0.823
pykA
Pyruvate kinase; Belongs to the pyruvate kinase family (508 aa)
         
  0.526
XCC3190
Predicted membrane protein (910 aa)
              0.463
XCC3189
Uncharacterized protein (454 aa)
              0.447
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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