STRINGSTRING
pepN protein (Xanthomonas campestris campestris) - STRING interaction network
"pepN" - Aminopeptidase N in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pepNAminopeptidase N (891 aa)    
Predicted Functional Partners:
XCC3167
Acetyltransferases including N-acetylases of ribosomal proteins (192 aa)
              0.809
yrbC
Toluene tolerance protein; ABC-type transport system involved in resistance to organic solvents auxiliary component (221 aa)
         
  0.704
XCC1659
C-type cytochrome biogenesis membrane protein; Cytochrome c biogenesis factor (665 aa)
           
  0.704
XCC2224
C-type cytochrome biogenesis membrane protein; Cytochrome c biogenesis factor (645 aa)
           
  0.704
vacJ
Surface lipoprotein (354 aa)
           
  0.609
rlmB
tRNA/rRNA methyltransferase; rRNA methylases; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family (300 aa)
   
      0.577
estB
Carboxylic ester hydrolase; Carboxylesterase type B; Belongs to the type-B carboxylesterase/lipase family (502 aa)
   
        0.568
alsT
Sodium/proton-dependent alanine carrier protein; Na+/alanine symporter (497 aa)
              0.547
rplR
50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance (119 aa)
     
 
  0.543
ompP6
Outer membrane protein and related peptidoglycan-associated (lipo)proteins; Belongs to the ompA family (172 aa)
         
  0.496
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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