STRINGSTRING
CAP50379.1 protein (Xanthomonas campestris campestris) - STRING interaction network
"CAP50379.1" - Integrase in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP50379.1Integrase (521 aa)    
Predicted Functional Partners:
CAP52472.1
Type V secretory pathway, adhesin AidA (1331 aa)
   
          0.734
CAP52000.1
Phage-related minor tail protein (1340 aa)
   
          0.733
CAP51980.1
annotation not available (1174 aa)
 
   
  0.708
repA
Uncharacterized protein conserved in bacteria (1187 aa)
 
   
  0.703
XCC0502
annotation not available (147 aa)
   
          0.693
CAP51045.1
annotation not available (275 aa)
   
          0.687
XCC0503
Uncharacterized protein (498 aa)
   
          0.653
XCC3161
Outer membrane receptor proteins mostly Fe transport (978 aa)
   
     
  0.615
XCC3477
Uncharacterized protein; Cytochrome c, mono- and diheme variants (239 aa)
   
          0.609
CAP52466.1
ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member (530 aa)
   
          0.607
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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