STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP50379.1Integrase (521 aa)    
Predicted Functional Partners:
CAP52472.1
Type V secretory pathway, adhesin AidA
  
     0.734
CAP52000.1
Phage-related minor tail protein
  
     0.733
CAP51980.1
annotation not available
 
  
 0.708
repA
Uncharacterized protein conserved in bacteria
 
  
 0.703
XCC0502
annotation not available
  
     0.693
CAP51045.1
annotation not available
  
     0.687
XCC0503
Uncharacterized protein
  
     0.653
XCC3161
Outer membrane receptor proteins mostly Fe transport
  
   
 0.615
XCC3477
Uncharacterized protein; Cytochrome c, mono- and diheme variants
  
     0.609
CAP52466.1
ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member
  
     0.607
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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