STRINGSTRING
CAP50409.1 protein (Xanthomonas campestris campestris) - STRING interaction network
"CAP50409.1" - annotation not available in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP50409.1annotation not available (882 aa)    
Predicted Functional Partners:
mod
Restriction-modification system DNA-methyltransferase; Adenine specific DNA methylase Mod (505 aa)
 
     
  0.965
CAP50410.1
annotation not available (177 aa)
              0.816
CAP50411.1
annotation not available (165 aa)
              0.677
CAP51980.1
annotation not available (1174 aa)
 
 
  0.662
repA
Uncharacterized protein conserved in bacteria (1187 aa)
 
 
  0.659
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (927 aa)
   
 
  0.613
exo
Exodeoxyribonuclease IX; 5’-3’ exonuclease (including N-terminal domain of PolI) (332 aa)
     
 
  0.552
rpoC
DNA-directed RNA polymerase subunit beta’; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates (1405 aa)
     
 
  0.549
dinG
Rad3-related DNA helicases (711 aa)
   
 
  0.545
yoaA
Rad3-related DNA helicases (668 aa)
   
 
  0.545
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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