STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP50409.1annotation not available (882 aa)    
Predicted Functional Partners:
mod
Restriction-modification system DNA-methyltransferase; Adenine specific DNA methylase Mod
 
   
 0.965
CAP50410.1
annotation not available
       0.816
CAP50411.1
annotation not available
       0.677
CAP51980.1
annotation not available
 
 
 0.662
repA
Uncharacterized protein conserved in bacteria
 
 
 0.659
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
  
 
 0.613
exo
Exodeoxyribonuclease IX; 5'-3' exonuclease (including N-terminal domain of PolI)
  
 
 0.552
rpoC
DNA-directed RNA polymerase subunit beta'; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
   
 
 0.549
yoaA
Rad3-related DNA helicases
  
 
 0.545
dinG
Rad3-related DNA helicases
  
 
 0.545
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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