STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimKProbable alpha-L-glutamate ligase; Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase) (301 aa)    
Predicted Functional Partners:
gltB
Glutamate synthase, alpha subunit; Glutamate synthase domain 2
  
  
 0.785
purD
Phosphoribosylamine-glycine ligase
     
 0.729
fthC
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
     
 0.591
yagT
Oxidoreductase; Aerobic-type carbon monoxide dehydrogenase small subunit CoxS/CutS homologs
      
 0.589
mdtB
Transport protein; Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
      
 0.586
mdtC
Transport protein; Cation/multidrug efflux pump; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
      
 0.586
XCC1042
Glycerophosphoryl diester phosphodiesterase
      
 0.585
XCC4234
Glycerophosphoryl diester phosphodiesterase
     
 0.585
oprN2
Outer membrane protein
      
 0.584
mexA
Multidrug resistance protein; Membrane-fusion protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
      
 0.583
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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