STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP50436.1Type II secretory pathway, component PulF (419 aa)    
Predicted Functional Partners:
pilD
Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
 
  
 0.990
pilB
Pilus biogenesis protein; Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
 
 
 0.953
pilT
Twitching motility protein; Tfp pilus assembly protein pilus retraction ATPase PilT
 
  
 0.946
CAP50306.1
Type II secretory pathway, component HofQ
 
 
 0.938
xpsE
Type II secretion system protein E; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
 
 
 0.914
gspE
General secretory pathway related protein; Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB
 
 
 0.913
xcsE
Type II secretory pathway ATPase PulE/Tfp pilus assembly pathway ATPase PilB
 
 
 0.912
coaE
Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family
       0.886
uptC
Type II secretion system protein-like protein; Tfp pilus assembly protein ATPase PilU
  
  
 0.881
pilU
Twitching motility protein; Tfp pilus assembly protein ATPase PilU
  
  
 0.880
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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