STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP50438.1Predicted membrane-associated, metal-dependent hydrolase (552 aa)    
Predicted Functional Partners:
CAP50440.1
Predicted spermidine synthase with an N-terminal membrane domain
 
     0.896
CAP50439.1
annotation not available
 
     0.874
pilB
Pilus biogenesis protein; Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
       0.715
pilA
Fimbrial protein precursor; Tfp pilus assembly protein, major pilin PilA
       0.626
dgkA
Diacylglycerol kinase; Recycling of diacylglycerol produced during the turnover of membrane phospholipid
 
    0.607
zipA
Cell division protein ZipA; Essential cell division protein that stabilizes the FtsZ protofilaments by cross-linking them and that serves as a cytoplasmic membrane anchor for the Z ring. Also required for the recruitment to the septal ring of downstream cell division proteins
    
   0.506
yjdB
Inner membrane protein; Predicted membrane-associated metal-dependent hydrolase
  
  
0.479
XCC1119
Uncharacterized protein; 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
 
  
 0.424
XCC1118
annotation not available
 
    0.422
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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