STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP50439.1annotation not available (209 aa)    
Predicted Functional Partners:
CAP50440.1
Predicted spermidine synthase with an N-terminal membrane domain
   
 0.995
CAP50438.1
Predicted membrane-associated, metal-dependent hydrolase
 
     0.874
pilB
Pilus biogenesis protein; Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB
       0.727
wxcO
Integral membrane protein
      
 0.700
pilA
Fimbrial protein precursor; Tfp pilus assembly protein, major pilin PilA
       0.617
dauE
Aklaviketone reductase; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)
      
 0.485
wxcL
Glycosyltransferases involved in cell wall biogenesis
      
 0.437
wxcD
wxcD; Glycosyltransferase
      
 0.436
CAP52209.1
annotation not available
  
     0.415
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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