STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilBPilus biogenesis protein; Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB (577 aa)    
Predicted Functional Partners:
pilD
Type 4 prepilin-like proteins leader peptide-processing enzyme; Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
 
  
 0.958
CAP50436.1
Type II secretory pathway, component PulF
 
 
 0.953
xcsF
Type II secretory pathway component PulF
 
 
 0.909
xpsF
Type II secretion system protein F; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
 
 
 0.908
CAP50306.1
Type II secretory pathway, component HofQ
 
 
 0.822
pilO
Tfp pilus assembly protein PilO
 
 
 0.819
pilM
Tfp pilus assembly protein ATPase PilM
 
 
 0.813
pefL
Type II secretion system protein L; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
 
 
 0.794
pilN
Tfp pilus assembly protein PilN
 
 
 0.751
pilA
Fimbrial protein precursor; Tfp pilus assembly protein, major pilin PilA
 
  
 0.730
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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