STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC3096Two-component system regulatory protein; Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains (464 aa)    
Predicted Functional Partners:
pilS
Member of the two-component regulatory system pilS/pilR, might be involved in the regulation of the expression of type 4 fimbriae
 
 
 0.992
rpoN1
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
 
  
 0.972
rpoN2
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
 
  
 0.964
XCC2360
Signal transduction histidine kinase
  
 
 0.796
pilL
Chemotaxis protein histidine kinase and related kinases
 
  
 0.735
ntrB
Two-component system sensor protein; Signal transduction histidine kinase nitrogen specific
 
 0.699
XCC2153
Two-component system sensor protein; FOG: PAS/PAC domain
   
 
 0.672
XCC2313
Uncharacterized protein; FOG: GAF domain
  
 
 0.547
gltB
Glutamate synthase, alpha subunit; Glutamate synthase domain 2
  
  
 0.546
sucC
Succinate--CoA ligase [ADP-forming] subunit beta; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The beta subunit provides nucleotide specificity of the enzyme and binds the substrate succinate, while the binding sites for coenzyme A and phosphate are found in the alpha subunit
       0.533
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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