STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pilSMember of the two-component regulatory system pilS/pilR, might be involved in the regulation of the expression of type 4 fimbriae (536 aa)    
Predicted Functional Partners:
XCC3096
Two-component system regulatory protein; Response regulator containing CheY-like receiver AAA-type ATPase and DNA-binding domains
 
 
 0.992
rpoN1
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
   
 
 0.844
rpoN2
RNA polymerase sigma-54 factor; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
   
 
 0.807
XCC2590
Two-component system regulatory protein; Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains
 
 
 
 0.786
pilG
Type IV pilus response regulator
 
 
 
 0.775
pilZ
Type IV fimbriae assembly protein; Tfp pilus assembly protein PilZ
  
   
 0.751
XCC3750
Uncharacterized protein containing LysM domain
  
     0.735
pilN
Tfp pilus assembly protein PilN
  
 
 
 0.717
tsr1
Chemotaxis protein; FOG: HAMP domain
    
 
 0.716
tsr2
Methyl-accepting chemotaxis protein
    
 
 0.716
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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