STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fecA1Citrate-dependent iron transporter; Outer membrane receptor for Fe3+-dicitrate (709 aa)    
Predicted Functional Partners:
mphE
2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; Belongs to the HpcH/HpaI aldolase family
 
    0.927
XCC3052
Uncharacterized protein; Siderophore synthetase component
 
     0.902
fecR
Fe2+-dicitrate sensor, membrane component
  
 
 0.877
XCC3051
annotation not available
 
     0.867
iucA
Iron transporter; Siderophore synthetase component
 
     0.860
yceE
Transport protein; Permeases of the major facilitator superfamily
 
     0.853
XCC3055
Diaminopimelate decarboxylase
 
     0.798
XCC3209
Outer membrane receptor proteins mostly Fe transport
  
  
 0.701
XCC4162
Ferrichrome-iron receptor 3; Outer membrane receptor proteins, mostly Fe transport
  
   
 0.678
piuB
annotation not available
 
  
 0.656
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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