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hrpA protein (Xanthomonas campestris campestris) - STRING interaction network
"hrpA" - ATP dependent RNA helicase in Xanthomonas campestris campestris
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hrpAATP dependent RNA helicase; HrpA-like helicases (1371 aa)    
Predicted Functional Partners:
CAP50555.1
annotation not available (57 aa)
              0.816
XCC2946
DNA-binding ferritin-like protein (oxidative damage protectant); Belongs to the Dps family (183 aa)
     
      0.739
trmB
tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA (261 aa)
 
      0.735
hrpG
HrpG protein; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain (262 aa)
           
  0.703
hrpF
HrpF protein; Pathogenicity-related export of effector proteins to host plants (921 aa)
           
  0.702
pcnB
Poly(A) polymerase I; Adds poly(A) tail to the 3’ end of many RNAs, which usually targets these RNAs for decay. Plays a significant role in the global control of gene expression, through influencing the rate of transcript degradation, and in the general RNA quality control (455 aa)
 
      0.670
orn
Oligoribonuclease; 3’-to-5’ exoribonuclease specific for small oligoribonucleotides (194 aa)
   
        0.582
fusA
Elongation factor G; Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome (705 aa)
     
 
  0.570
rhlB
ATP-dependent RNA helicase RhlB; DEAD-box RNA helicase involved in RNA degradation. Has RNA-dependent ATPase activity and unwinds double-stranded RNA; Belongs to the DEAD box helicase family. RhlB subfamily (573 aa)
   
 
  0.545
XCC4186
Leucine-rich repeat (LRR) protein (610 aa)
     
 
  0.514
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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