STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC2927Periplasmic protein TonB links inner and outer membranes (291 aa)    
Predicted Functional Partners:
exbB2
annotation not available
 
 
 0.956
XCC2887
Outer membrane receptor proteins mostly Fe transport
 
 
 0.902
gshB
Glutathione synthase/Ribosomal protein S6 modification enzyme (glutaminyl transferase)
     
 0.899
XCC3161
Outer membrane receptor proteins mostly Fe transport
 
 
 0.897
exbD4
annotation not available
 
 
 0.897
exbB1
Biopolymer transport protein ExbB; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates. Protects ExbD from proteolytic degradation and functionally stabilizes TonB (By similarity)
  
 
 0.884
XCC0120
Outer membrane receptor proteins, mostly Fe transport
  
 
 0.883
iroN
Outer membrane receptor proteins, mostly Fe transport
  
 
 0.883
XCC0119
Outer membrane receptor proteins mostly Fe transport
   
 
 0.857
exbD2
Biopolymer transport protein exbD2; Involved in the TonB-dependent energy-dependent transport of various receptor-bound substrates
  
 
 0.816
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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