STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aspGAsparaginase (354 aa)    
Predicted Functional Partners:
cutC
Copper homeostasis protein CutC; Participates in the control of copper homeostasis
 
   
 0.918
nahA
N-acetyl-beta-hexosaminidase
 
  
 0.697
bmnA
Beta-mannosidase; Beta-galactosidase/beta-glucuronidase
  
  
 0.593
XCC0128
Transposase and inactivated derivatives
      
 0.583
XCC0127
Transposase and inactivated derivatives IS5 family
      
 0.583
chiA
Uncharacterized protein; Predicted glycosyl hydrolase
      
 0.582
fucA1
Alpha-L-fucosidase
 
  
 0.569
ansA
annotation not available
 
     0.552
bga2
Beta-galactosidase
      
 0.514
cysD
COG02046: ATP sulfurylase (sulfate adenylyltransferase)
   
    0.510
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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