STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
chiAUncharacterized protein; Predicted glycosyl hydrolase (353 aa)    
Predicted Functional Partners:
fucA1
Alpha-L-fucosidase
 
   
 0.953
nahA
N-acetyl-beta-hexosaminidase
 
   
 0.887
nodB
Acetylxylan esterase; Predicted xylanase/chitin deacetylase
   
 0.865
XCC2892
Glucan 1,4-beta-glucosidase; Beta-glucosidase-related glycosidases
 
   
 0.817
bmnA
Beta-mannosidase; Beta-galactosidase/beta-glucuronidase
 
   
 0.799
bga2
Beta-galactosidase
 
   
 0.655
XCC2887
Outer membrane receptor proteins mostly Fe transport
 
   
 0.625
aspG
Asparaginase
      
 0.582
XCC0128
Transposase and inactivated derivatives
      
 0.578
XCC0127
Transposase and inactivated derivatives IS5 family
      
 0.578
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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