STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC2880UPF0060 membrane protein XCC2880 (111 aa)    
Predicted Functional Partners:
XCC2881
Uncharacterized protein; Predicted pyrophosphatase
       0.855
cysQ
Sulfite synthesis pathway protein; 3-Phosphoadenosine 5-phosphosulfate (PAPS) 3-phosphatase
       0.729
nudE
ADP compounds hydrolase; ADP-ribose pyrophosphatase; Nicotinamide mononucleotide adenylyltransferase
       0.713
XCC2885
Ribosomal RNA small subunit methyltransferase E; Specifically methylates the N3 position of the uracil ring of uridine 1498 (m3U1498) in 16S rRNA. Acts on the fully assembled 30S ribosomal subunit
       0.529
XCC2884
Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
       0.529
XCC2879
Uncharacterized protein; Membrane protease subunits, stomatin/prohibitin homologs
       0.514
XCC2878
Membrane protein implicated in regulation of membrane protease activity
       0.514
XCC1325
Uncharacterized protein; Putative translation initiation inhibitor yjgF family
      
 0.475
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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