STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC2858Membrane proteins related to metalloendopeptidases (340 aa)    
Predicted Functional Partners:
XCC2258
Peptidase; Membrane proteins related to metalloendopeptidases
  
   
 0.851
nlpD
Lipoprotein; Membrane proteins related to metalloendopeptidases
 
  
 0.760
XCC0022
Uncharacterized protein; Membrane-bound metallopeptidase
  
   
 0.754
metXS
Homoserine O-succinyltransferase; Transfers a succinyl group from succinyl-CoA to L- homoserine, forming succinyl-L-homoserine
 
     0.653
sppA
Protease 4; Periplasmic serine proteases (ClpP class)
      
 0.603
XCC2856
Cystathionine beta-lyases/cystathionine gamma-synthases
       0.586
XCC2855
Homoserine dehydrogenase; Unnamed protein product
       0.586
hisC3
Aminotransferase; Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase
      
 0.586
phoA
Alkaline phosphatase; Unnamed protein product; Belongs to the alkaline phosphatase family
      
 0.572
lytM
Membrane proteins related to metalloendopeptidases
  
     0.556
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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