STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ahyRTranscriptional regulator ahyR/asaR family; DNA-binding HTH domain-containing proteins (272 aa)    
Predicted Functional Partners:
XCC2360
Signal transduction histidine kinase
   
 
 0.803
pip2
Proline imino-peptidase; Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily)
 
     0.744
XCC2819
Amino acid transporters
 
   
 0.688
XCC2153
Two-component system sensor protein; FOG: PAS/PAC domain
 
 
 
 0.681
rpfC
Sensory/regulatory protein RpfC; Member of the two-component regulatory system RpfG/RpfC, which is required for full virulence and for formation and dispersal of biofilms. Involved in sensing and responding to the diffusible signaling factor (DSF), which is essential for cell- cell signaling. RpfC is probably a sensor of environmental signals, including DSF, which is autophosphorylated at a histidine residue in response to the signal. Then, probably activates RpfG via a four-step phosphorelay. May also negatively regulate the production of DSF, independently of RpfG (By similarity)
   
 
 0.592
XCC0049
Uncharacterized protein conserved in bacteria
  
     0.582
tlpC
Methyl-accepting chemotaxis protein
 
 
 0.573
pilL
Chemotaxis protein histidine kinase and related kinases
   
 
 0.548
XCC0483
Two-component system sensor protein; Signal transduction histidine kinase
   
 
 0.546
XCC2836
annotation not available
  
     0.477
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
Server load: low (12%) [HD]