STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pel1Pectate lyase (353 aa)    
Predicted Functional Partners:
pme1
Pectinesterase; Pectin methylesterase
  
 0.985
pme2
Pectinesterase; Pectin methylesterase
  
 0.983
pglA1
Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family
 
  
 0.977
pglA2
Endopolygalacturonase; Belongs to the glycosyl hydrolase 28 family
 
  
 0.961
pel3
Pectate lyase
  
  
0.880
pel2
annotation not available
  
  
0.879
XCC0154
Rhamnogalacturonan acetylesterase; Lysophospholipase L1 and related esterases
 
   
 0.788
galA1
Arabinogalactan endo-14-beta-galactosidase
  
   
 0.762
hrpW
annotation not available
  
   
 0.761
manA
Mannan endo-1,4-beta-mannosidase; Endoglucanase; Belongs to the glycosyl hydrolase 5 (cellulase A) family
  
   
 0.736
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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