STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bedBBenzene 1,2-dioxygenase, ferredoxin protein; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases (109 aa)    
Predicted Functional Partners:
XCC2770
Histone acetyltransferase HPA2 and related acetyltransferases
 
     0.913
XCC2003
Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain)
  
  
 0.791
nasD
NAD(P)H-nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
  
 
 0.714
sufC
ABC transporter ATP-binding protein; ABC-type transport system involved in Fe-S cluster assembly ATPase component
  
    0.692
XCC2769
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
       0.650
sufD
ABC transporter permease; ABC-type transport system involved in Fe-S cluster assembly permease component
  
    0.647
XCC0297
Vanillate O-demethylase oxygenase subunit; Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases large terminal subunit
  
 
 0.572
XCC0363
Vanillate O-demethylase oxygenase subunit; Phenylpropionate dioxygenase and related ring-hydroxylating dioxygenases large terminal subunit
  
 
 0.572
fadH
NADH:flavin oxidoreductases Old Yellow Enzyme family
  
 
 0.540
bcp
Peroxiredoxin Bcp; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides and as sensor of hydrogen peroxide-mediated signaling events
   
    0.512
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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