STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufDABC transporter permease; ABC-type transport system involved in Fe-S cluster assembly permease component (420 aa)    
Predicted Functional Partners:
sufC
ABC transporter ATP-binding protein; ABC-type transport system involved in Fe-S cluster assembly ATPase component
 
 0.999
sufB
ABC transporter permease; ABC-type transport system involved in Fe-S cluster assembly permease component
 
 
0.997
XCC2769
Cysteine desulfurase; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
 
 0.996
XCC2252
SufE protein probably involved in Fe-S center assembly
 
 
 0.976
XCC0849
Uncharacterized protein; Predicted metal-sulfur cluster biosynthetic enzyme
 
  
 0.828
iscA
Uncharacterized protein; Belongs to the HesB/IscA family
  
 
 0.787
sufR
Uncharacterized protein; Predicted transcriptional regulator
 
   
 0.756
XCC2770
Histone acetyltransferase HPA2 and related acetyltransferases
       0.668
erpA
Iron-sulfur cluster insertion protein ErpA; Required for insertion of 4Fe-4S clusters for at least IspG
  
 
 0.659
bedB
Benzene 1,2-dioxygenase, ferredoxin protein; Ferredoxin subunits of nitrite reductase and ring-hydroxylating dioxygenases
  
    0.647
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
Server load: low (7%) [HD]