STRINGSTRING
hup protein (Xanthomonas campestris campestris) - STRING interaction network
"hup" - annotation not available in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hupannotation not available (140 aa)    
Predicted Functional Partners:
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3- phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate (438 aa)
         
  0.713
leuS
Leucine--tRNA ligase; Unnamed protein product; Belongs to the class-I aminoacyl-tRNA synthetase family (906 aa)
         
  0.616
XCC3711
annotation not available (885 aa)
   
        0.602
XCC1659
C-type cytochrome biogenesis membrane protein; Cytochrome c biogenesis factor (665 aa)
           
  0.600
XCC2224
C-type cytochrome biogenesis membrane protein; Cytochrome c biogenesis factor (645 aa)
           
  0.600
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5’-3’ exonuclease activity (927 aa)
     
 
  0.584
XCC3713
annotation not available (237 aa)
   
          0.576
XCC3710
annotation not available (244 aa)
   
          0.573
metG
Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation (694 aa)
   
 
  0.526
XCC3712
Flagellar motor protein (215 aa)
   
          0.524
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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