STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rlmJRibosomal RNA large subunit methyltransferase J; Specifically methylates the adenine in position 2030 of 23S rRNA (328 aa)    
Predicted Functional Partners:
creB
Two-component system regulatory protein; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
       0.679
XCC2697
Uncharacterized protein; Histone acetyltransferase HPA2 and related acetyltransferases
       0.668
rsmC
Ribosomal RNA small subunit methyltransferase C; 16S RNA G1207 methylase RsmC
  
  
 0.618
creC
Two-component system sensor protein; Signal transduction histidine kinase
       0.612
CAP50817.1
annotation not available
       0.608
ksgA
Ribosomal RNA small subunit methyltransferase A; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits
     
 0.589
prmC
Release factor glutamine methyltransferase; Methylates the class 1 translation termination release factors RF1/PrfA and RF2/PrfB on the glutamine residue of the universally conserved GGQ motif
     
 0.549
pssA2
Phosphatidylserine synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family
  
  
 0.536
XCC2392
Ribosomal RNA small subunit methyltransferase D; Specifically methylates the guanine in position 966 of 16S rRNA in the assembled 30S particle
     
 0.527
yheS
ABC transporter ATP-binding protein; ATPase components of various ABC-type transport systems
 
    0.508
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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