STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC2687annotation not available (363 aa)    
Predicted Functional Partners:
gltX
Glutamate--tRNA ligase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily
  
    0.667
fur2
Transcriptional regulator fur family; Fe2+/Zn2+ uptake regulation proteins; Belongs to the Fur family
  
    0.638
nthA
Nitrilase; Predicted amidohydrolase
  
  
 0.538
avrBs2
Avirulence protein; Glycerophosphoryl diester phosphodiesterase,probable
  
    0.513
XCC3981
annotation not available
  
     0.491
hpaP
annotation not available
  
     0.485
XCC3797
annotation not available
  
     0.481
gumI
GDP-mannose:glycolipid 4-beta-D-mannosyltransferase; Nonprocessive beta-mannosyltransferase that catalyzes the transfer of a mannose residue from GDP-mannose to glucuronic acid-beta-1,2-mannose-alpha-1,3-glucose-beta-1,4-glucose-PP- polyisoprenyl to form the lipid-linked pentasaccharide repeating unit of xanthan, Man-GlcA-Man-Glc(2)-PP-Pol. Is involved in the biosynthesis of the exopolysaccharide xanthan (By similarity); Belongs to the glycosyltransferase 94 family
  
 
   0.475
XCC2153
Two-component system sensor protein; FOG: PAS/PAC domain
 
 
   0.473
XCC3191
Uncharacterized protein
  
     0.446
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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