STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CAP50899.1Outer membrane receptor for ferrienterochelin and colicins (1034 aa)    
Predicted Functional Partners:
ccmD
Heme exporter protein D; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
  
     0.664
XCC2400
Outer membrane receptor proteins mostly Fe transport
  
    0.600
CAP50900.1
annotation not available
       0.576
XCC0946
Outer membrane receptor proteins mostly Fe transport
  
    0.568
XCC1656
Uncharacterized protein; Cytochrome c biogenesis factor
  
     0.539
dpp
Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
  
     0.537
XCC4235
Outer membrane receptor proteins mostly Fe transport
  
   0.523
XCC1037
Outer membrane receptor proteins mostly Fe transport
  
  
 0.517
XCC4180
Uncharacterized protein; Dipeptidyl aminopeptidases/acylaminoacyl-peptidases
  
    0.507
XCC3393
Uncharacterized protein; Glycosyltransferase
  
     0.504
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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