STRINGSTRING
XCC2562 protein (Xanthomonas campestris campestris) - STRING interaction network
"XCC2562" - Uncharacterized membrane protein (homolog of Drosophila rhomboid) in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XCC2562Uncharacterized membrane protein (homolog of Drosophila rhomboid) (487 aa)    
Predicted Functional Partners:
XCC2560
annotation not available (278 aa)
 
          0.702
XCC1430
annotation not available (874 aa)
 
          0.683
greB
Transcription elongation factor GreB; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3’terminus. GreB releases sequences of up to 9 nucleotides in length (168 aa)
              0.618
XCC3477
Uncharacterized protein; Cytochrome c, mono- and diheme variants (239 aa)
   
          0.587
XCC0572
annotation not available (384 aa)
   
          0.585
XCC0114
Transcriptional regulator; FOG- WD40 repeat (1172 aa)
 
        0.580
CAP52000.1
Phage-related minor tail protein (1340 aa)
   
          0.572
XCC0073
Predicted signal transduction protein COG- Predicted signal transduction protein (375 aa)
   
          0.555
CAP52472.1
Type V secretory pathway, adhesin AidA (1331 aa)
   
          0.550
XCC0449
Lytic enzyme; RTX toxins and related Ca2+-binding proteins (576 aa)
 
          0.517
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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