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fimV protein (Xanthomonas campestris campestris) - STRING interaction network
"fimV" - FimV protein in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fimVFimV protein; Tfp pilus assembly protein FimV (652 aa)    
Predicted Functional Partners:
XCC2547
Uncharacterized protein; Predicted enzyme related to lactoylglutathione lyase (126 aa)
              0.898
trpF
N-(5’-phosphoribosyl)anthranilate isomerase; Unnamed protein product; Belongs to the TrpF family (222 aa)
              0.810
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs (257 aa)
              0.810
XCC3750
Uncharacterized protein containing LysM domain (402 aa)
 
     
  0.715
XCC2927
Periplasmic protein TonB links inner and outer membranes (291 aa)
   
 
 
  0.649
XCC0509
Uncharacterized protein; Type V secretory pathway, adhesin AidA (433 aa)
   
          0.616
XCC0951
annotation not available (355 aa)
 
        0.614
XCC0869
Uncharacterized protein; FOG- TPR repeat (562 aa)
   
     
  0.568
XCC0842
annotation not available (784 aa)
   
          0.565
XCC2919
Chemotaxis signal transduction protein (158 aa)
   
     
  0.561
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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