STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fimVFimV protein; Tfp pilus assembly protein FimV (652 aa)    
Predicted Functional Partners:
XCC2547
Uncharacterized protein; Predicted enzyme related to lactoylglutathione lyase
       0.898
truA
tRNA pseudouridine synthase A; Formation of pseudouridine at positions 38, 39 and 40 in the anticodon stem and loop of transfer RNAs
       0.810
trpF
N-(5'-phosphoribosyl)anthranilate isomerase; Unnamed protein product; Belongs to the TrpF family
       0.810
XCC3750
Uncharacterized protein containing LysM domain
 
   
 0.715
XCC2927
Periplasmic protein TonB links inner and outer membranes
  
 
 
 0.649
XCC0509
Uncharacterized protein; Type V secretory pathway, adhesin AidA
  
     0.616
XCC0951
annotation not available
 
    0.614
XCC0869
Uncharacterized protein; FOG: TPR repeat
  
   
 0.568
XCC0842
annotation not available
  
     0.565
XCC2919
Chemotaxis signal transduction protein
  
   
 0.561
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
Server load: low (16%) [HD]