STRINGSTRING
trpI protein (Xanthomonas campestris campestris) - STRING interaction network
"trpI" - Transcriptional regulator in Xanthomonas campestris campestris
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trpITranscriptional regulator (298 aa)    
Predicted Functional Partners:
XCC2543
Tryptophan synthase beta chain; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine (405 aa)
              0.630
trpA
Tryptophan synthase alpha chain; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3- phosphate; Belongs to the TrpA family (272 aa)
              0.622
XCC2542
annotation not available (172 aa)
              0.593
XCC3332
Transcriptional regulator (300 aa)
   
          0.480
XCC1827
annotation not available (97 aa)
   
          0.468
XCC3719
annotation not available (310 aa)
   
        0.463
XCC0043
Transcriptional regulator (296 aa)
   
          0.453
gbpR
Galactose-binding protein regulator; Transcriptional regulator (345 aa)
   
        0.444
ndpA
ndpA; Nucleoid-associated protein (393 aa)
   
          0.419
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
Server load: low (21%) [HD]