STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
virD4VirD4 protein; Type IV secretory pathway, VirD4 components (557 aa)    
Predicted Functional Partners:
virB11
VirB11 protein; Type IV secretory pathway, VirB11 components,and related ATPases involved in archaeal flagella biosynthesis
   
 0.957
ptlF
VirB9 protein; Type IV secretory pathway, VirB9 components
   
 0.952
virB4
VirB4 protein; Type IV secretory pathway, VirB4 components
   
 0.932
virB1
Type IV secretion system lytic murein transglycosylase component VirB1; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
 
  
 0.925
virB10
Type IV secretion system putative channel component VirB4; Type IV secretory pathway, VirB10 components
 
   
 0.895
ptlE
Type IV secretion system, component VirB8
   
 0.873
CAP51041.1
Type IV secretory pathway, VirB4 components
   
 0.849
CAP51033.1
annotation not available
 
   
 0.784
ptlB
VirB3 protein; Type IV secretory pathway, VirB3 components
 
   
 0.778
CAP51025.1
annotation not available
       0.738
Your Current Organism:
Xanthomonas campestris campestris
NCBI taxonomy Id: 340
Other names: X. campestris pv. campestris, Xanthomonas campestris, Xanthomonas campestris (pv. campestris), Xanthomonas campestris campestris, Xanthomonas campestris pv. campestris
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